Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144666079_144668879_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

144666079 - 144668879

Intron Length:

2801

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGGTC

5'SS Class:

strong_major

3'SS Sequence:

TTTACATTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

AATATTTTACAT

Flanking Amino Acid:

DNLRRHHQYQEVMRNLVKRY

Intron Amino Acid Position:

707

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

74.2

36.3

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

80.5

0.69

0.8

78.3

Minor 5ss

33.1

-1.9

3.8

49.2

47.3

Minor BPS

48.5

-0

1.7

65.05

39.3

Associated Gene:

Gene:

TRPC4

Ensembl Gene ID:

ENSAPLG00000005816

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006029

144664111 - 144821063

156953