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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144668922_144677879_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
144668922 - 144677879
Intron Length:
8958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTCT
Flanking Amino Acid:
RKPESFGTIGRRAADNLRRH
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
75.3
40.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
95.5
1.02
0.5
88.9
28.1
Minor 5ss
36.4
-1.5
2.9
43.6
43.3
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
TRPC4
Ensembl Gene ID:
ENSAPLG00000005816
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006029
144664111 - 144821063
156953