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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144679969_144680876_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
144679969 - 144680876
Intron Length:
908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATTAT
U12 Branch Point Sequence:
TATTATACAGCT
Flanking Amino Acid:
RCAEQNNAFSTLFETLQSLF
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.3
70.6
41.4
Major BPS
67
0.42
1.3
60.1
46.3
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
34.4
-1.8
3.2
42.8
37.9
Minor BPS
44
-0.3
2.1
67.88
42.4

Associated Gene:

Gene:
TRPC4
Ensembl Gene ID:
ENSAPLG00000005816
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006029
144664111 - 144821063
156953