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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144702394_144728046_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
144702394 - 144728046
Intron Length:
25653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TAATAAAGAAAT
Flanking Amino Acid:
KLAIKYRQKEFVAQPNCQQL
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.9
30.1
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
86
0.81
0.7
80.8
24.4
Minor 5ss
33.9
-1.8
2.8
41.5
45.1
Minor BPS
40.9
-0.6
2
60.71
41.1

Associated Gene:

Gene:
TRPC4
Ensembl Gene ID:
ENSAPLG00000005816
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006029
144664111 - 144821063
156953