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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14487695_14490420_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14487695 - 14490420
Intron Length:
2726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTACTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTTTTAATT
Flanking Amino Acid:
YVETSASGGTVSLIAFTTIA
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72.7
44.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
75.7
0.58
1
74
40.3
Minor 5ss
42.4
-0.8
3.5
64.4
47
Minor BPS
77.3
0.94
1
88.63
29.6

Associated Gene:

Gene:
ERGIC2
Ensembl Gene ID:
ENSAPLG00000012035
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042526
14486569 - 14501827
15259
ENSAPLT00000039130
14487549 - 14501827
14279
ENSAPLT00000012554
14485072 - 14502980
17909
ENSAPLT00000046784
14482476 - 14501827
19352