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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14491938_14493120_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14491938 - 14493120
Intron Length:
1183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
CTTTTTAAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATGCCTCAATA
Flanking Amino Acid:
IDITVAMRCQYVGADVLDLA
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
78.2
36.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.5
0.53
1
68
41.4
Minor 5ss
42.3
-0.9
2.8
55.7
41.6
Minor BPS
64.2
0.44
1.6
72.89
39.2

Associated Gene:

Gene:
ERGIC2
Ensembl Gene ID:
ENSAPLG00000012035
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039130
14487549 - 14501827
14279
ENSAPLT00000012554
14485072 - 14502980
17909
ENSAPLT00000046784
14482476 - 14501827
19352
ENSAPLT00000042526
14486569 - 14501827
15259