About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14493192_14494267_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14493192 - 14494267
Intron Length:
1076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
ATTTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTTATTAGGT
Flanking Amino Acid:
ASADGLIYEPVVFELSPQQK
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.6
34.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
87.1
0.83
0.8
85.1
34.9
Minor 5ss
38.5
-1.3
3.3
54.7
43.6
Minor BPS
49
0.01
2.1
73.55
43.1

Associated Gene:

Gene:
ERGIC2
Ensembl Gene ID:
ENSAPLG00000012035
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042526
14486569 - 14501827
15259
ENSAPLT00000039130
14487549 - 14501827
14279
ENSAPLT00000012554
14485072 - 14502980
17909
ENSAPLT00000046784
14482476 - 14501827
19352