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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14494309_14495440_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14494309 - 14495440
Intron Length:
1132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGAA
5'SS Class:
strong_major
3'SS Sequence:
GTATAACCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GTCTGTATAACC
Flanking Amino Acid:
ELSPQQKEWQRMLQLIQSRL
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.6
32.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
65.1
0.34
1
60.5
41.2
Minor 5ss
37.5
-1.4
3.2
49
47.2
Minor BPS
49.2
-0
2
63.6
42.1

Associated Gene:

Gene:
ERGIC2
Ensembl Gene ID:
ENSAPLG00000012035
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046784
14482476 - 14501827
19352
ENSAPLT00000042526
14486569 - 14501827
15259
ENSAPLT00000039130
14487549 - 14501827
14279
ENSAPLT00000012554
14485072 - 14502980
17909