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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144944767_144945402_R

Intron Information:

Intron Rank:
130396
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
144944767 - 144945402
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTTGGAA
5'SS Class:
weak_major
3'SS Sequence:
TTTTATATAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATATAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.7
0.16
1.3
54.7
38.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.7
0.56
0.9
71.4
38
Minor 5ss
30.1
-2.3
3.3
38.1
46.8
Minor BPS
61.4
0.35
1.7
77.21
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033755
144944116 - 144946114
1999
ENSAPLT00000017788
144944116 - 144946114
1999