About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14495543_14496335_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14495543 - 14496335
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTGTTTAAAC
Flanking Amino Acid:
FKSASTALPPREDNSLQSPD
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.3
32.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77
0.61
1
74.1
39.5
Minor 5ss
33.3
-1.9
2.9
41.3
44.8
Minor BPS
66.3
0.49
1.8
79.33
36

Associated Gene:

Gene:
ERGIC2
Ensembl Gene ID:
ENSAPLG00000012035
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042526
14486569 - 14501827
15259
ENSAPLT00000012554
14485072 - 14502980
17909
ENSAPLT00000046784
14482476 - 14501827
19352