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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14495543_14497489_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14495543 - 14497489
Intron Length:
1947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTACTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCCATAAAA
Flanking Amino Acid:
FKSASTALPPRAIPHPRGHA
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.3
32.8
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
82.4
0.73
0.7
81.7
30
Minor 5ss
33.3
-1.9
2.9
41.3
44.8
Minor BPS
73.2
0.72
1.7
86.2
31.8

Associated Gene:

Gene:
ERGIC2
Ensembl Gene ID:
ENSAPLG00000012035
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039130
14487549 - 14501827
14279