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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14497546_14498560_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14497546 - 14498560
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TATTGCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTTCTGTATT
Flanking Amino Acid:
AHLAALVSHESYNFSHRIDH
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
74.4
36.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
84.5
0.78
0.8
81.3
36
Minor 5ss
44.8
-0.6
2.8
60.6
43.7
Minor BPS
62.2
0.46
1.8
84.17
36.4

Associated Gene:

Gene:
ERGIC2
Ensembl Gene ID:
ENSAPLG00000012035
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042526
14486569 - 14501827
15259
ENSAPLT00000039130
14487549 - 14501827
14279
ENSAPLT00000012554
14485072 - 14502980
17909
ENSAPLT00000046784
14482476 - 14501827
19352