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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14499981_14501494_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14499981 - 14501494
Intron Length:
1514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TCCCATCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
GTGCAACTAACT
Flanking Amino Acid:
ETHQFSVTERERVINHAAGS
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.4
39.5
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
75.2
0.57
0.8
72.3
32
Minor 5ss
31.6
-2.1
3.1
31.8
42.6
Minor BPS
45.4
-0.2
2.1
65.96
43.4

Associated Gene:

Gene:
ERGIC2
Ensembl Gene ID:
ENSAPLG00000012035
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042526
14486569 - 14501827
15259
ENSAPLT00000039130
14487549 - 14501827
14279
ENSAPLT00000012554
14485072 - 14502980
17909
ENSAPLT00000046784
14482476 - 14501827
19352