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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145011061_145011963_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145011061 - 145011963
Intron Length:
903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATGC
Flanking Amino Acid:
IWVVLHLYKQGIPLCALINQ
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
84.6
33.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
91.8
0.94
0.7
87.5
30
Minor 5ss
39
-1.2
3.1
50.4
45.6
Minor BPS
63.4
0.4
1.9
77.51
38.8

Associated Gene:

Gene:
PDCL3
Ensembl Gene ID:
ENSAPLG00000016296
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017004
145008792 - 145014365
5574