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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145012108_145012808_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145012108 - 145012808
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGAGCA
5'SS Class:
major
3'SS Sequence:
TCTTGTTGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTGTTTTTAAGA
Flanking Amino Acid:
EEDEKAIEMYRQQRLAEMKA
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.1
69.9
34.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
80.5
0.69
0.9
75.5
38.3
Minor 5ss
27.1
-2.6
3
31.6
42.2
Minor BPS
59.2
0.29
1.6
65.7
41.8

Associated Gene:

Gene:
PDCL3
Ensembl Gene ID:
ENSAPLG00000016296
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017004
145008792 - 145014365
5574