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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145015246_145018482_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
145015246 - 145018482
Intron Length:
3237

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCACAGCCT
5'SS Class:
major
3'SS Sequence:
AGAAAAAATGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
GATGTCTGGACG
Flanking Amino Acid:
MPSRQHTELVAGKPGSKAK
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.5
0.25
1.3
57.7
40.8
Major BPS
54
0.1
1
59.7
32.6
Major PPT
49.4
-0
1.1
38.3
42.7
Minor 5ss
20.9
-3.4
4.2
30.3
42.9
Minor BPS
48.3
-0.2
1.7
52.42
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002007
145015218 - 145022321
7104