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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145060194_145062903_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145060194 - 145062903
Intron Length:
2710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCATACC
5'SS Class:
major
3'SS Sequence:
CTATTTTATGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTTCTCTATTT
Flanking Amino Acid:
EEERWSEEFQPTGKAFTGNL
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
68.4
36.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.7
0.44
1.1
71.9
37.2
Minor 5ss
29.8
-2.3
2.9
37.5
39.9
Minor BPS
53.6
0.19
1.9
75.99
41.5

Associated Gene:

Gene:
CHST10
Ensembl Gene ID:
ENSAPLG00000016175
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046768
145057306 - 145068814
11509
ENSAPLT00000029148
145059945 - 145068814
8870
ENSAPLT00000016872
145056578 - 145067951
11374