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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145105727_145109152_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145105727 - 145109152
Intron Length:
3426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTACGGCGC
5'SS Class:
major
3'SS Sequence:
TTTGTGTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTGTGTGAACA
Flanking Amino Acid:
LCRNKPHWPAGHYVKAKALS
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
50.2
46.5
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
69.7
0.44
1.1
65.6
44.4
Minor 5ss
30.5
-2.2
3.5
41.9
45
Minor BPS
50
-0
2.2
71.44
41

Associated Gene:

Gene:
LONRF2
Ensembl Gene ID:
ENSAPLG00000016120
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020486
145090437 - 145120388
29952
ENSAPLT00000016829
145090437 - 145120730
30294