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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145120215_145120571_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145120215 - 145120571
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
TGTTCTTTTACA
Flanking Amino Acid:
SMPGKEPEPQSNPSGPAWYW
Intron Amino Acid Position:
752

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
82.6
29.4
Major BPS
61.1
0.28
1
67
29.8
Major PPT
89.1
0.88
0.7
83.7
31.3
Minor 5ss
35.2
-1.7
3
49.1
46.7
Minor BPS
71.8
0.68
1.6
80.12
35.4

Associated Gene:

Gene:
LONRF2
Ensembl Gene ID:
ENSAPLG00000016120
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016829
145090437 - 145120730
30294