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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14514538_14516403_R

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14514538 - 14516403
Intron Length:
1866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTCAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCACTGTTACCA
Flanking Amino Acid:
SDTEDDKSHKELQSCLSVWD
Intron Amino Acid Position:
2495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.2
65.2
42.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
100
1.12
0.4
100
0
Minor 5ss
38
-1.4
3.1
49.9
46.3
Minor BPS
45
-0.3
2.2
56.69
42.7

Associated Gene:

Gene:
LRRK2
Ensembl Gene ID:
ENSAPLG00000012447
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013078
14514400 - 14584668
70269