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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14525310_14525602_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14525310 - 14525602
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCATG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
CLYCNSLSKQSKQKNFFLVG
Intron Amino Acid Position:
2263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.4
41.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.9
0.85
0.8
86
32.7
Minor 5ss
49.1
-0.1
2.5
65.5
45.8
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
LRRK2
Ensembl Gene ID:
ENSAPLG00000012447
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042677
14516850 - 14584668
67819
ENSAPLT00000013078
14514400 - 14584668
70269