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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14531234_14531894_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14531234 - 14531894
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATATA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TCTCATTTATTT
Flanking Amino Acid:
LDDLLKKAEEGDLLVNPEQP
Intron Amino Acid Position:
1843

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
82.1
30.4
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
92.2
0.95
0.7
88.5
28.4
Minor 5ss
44.8
-0.6
2.7
59.5
45.1
Minor BPS
50.5
0.09
1.8
69.9
41.6

Associated Gene:

Gene:
LRRK2
Ensembl Gene ID:
ENSAPLG00000012447
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013078
14514400 - 14584668
70269
ENSAPLT00000042677
14516850 - 14584668
67819