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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14533551_14534416_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14533551 - 14534416
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AAATCATTAAAT
Flanking Amino Acid:
LGEDQLLIPSSLSDHRPVIE
Intron Amino Acid Position:
1678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.8
0.92
0.7
89
27.8
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
61.9
0.45
1.7
75.93
39.4

Associated Gene:

Gene:
LRRK2
Ensembl Gene ID:
ENSAPLG00000012447
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042677
14516850 - 14584668
67819
ENSAPLT00000013078
14514400 - 14584668
70269