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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145367811_145369977_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
145367811 - 145369977
Intron Length:
2167

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTA|GCAATGTAA
5'SS Class:
weak_major
3'SS Sequence:
ATGGGTCTGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
AGTTGCTCAAAA
Flanking Amino Acid:
FSFPNKVRDVSSSGQDQQRG
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53
0.07
1.3
51.1
36
Major BPS
54
0.1
1
59.7
32.6
Major PPT
61.5
0.26
1.1
58.7
46.7
Minor 5ss
27.6
-2.6
4.1
38.9
42
Minor BPS
49.3
-0
2.1
64.58
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016085
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016776
145228526 - 145370010
141485