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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14538363_14539568_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14538363 - 14539568
Intron Length:
1206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAAGC
5'SS Class:
major
3'SS Sequence:
ATCTTGCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTTGAATTAATG
Flanking Amino Acid:
AMKPWLFNIKARASTSPVIL
Intron Amino Acid Position:
1446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
64.4
39.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
69.9
0.45
1
65
40.8
Minor 5ss
40
-1.1
2.8
52.9
43.9
Minor BPS
48.9
-0.2
1.9
58.4
43.1

Associated Gene:

Gene:
LRRK2
Ensembl Gene ID:
ENSAPLG00000012447
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042677
14516850 - 14584668
67819
ENSAPLT00000013078
14514400 - 14584668
70269