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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14539697_14540752_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14539697 - 14540752
Intron Length:
1056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATCATT
Flanking Amino Acid:
ELILNVWDFGGQEEFYSTHP
Intron Amino Acid Position:
1403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
100
1.24
0.5
100
0
Major PPT
75.9
0.58
0.9
76.1
32.7
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
58.3
0.34
2
84.17
37

Associated Gene:

Gene:
LRRK2
Ensembl Gene ID:
ENSAPLG00000012447
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042677
14516850 - 14584668
67819
ENSAPLT00000013078
14514400 - 14584668
70269