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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145456490_145464214_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145456490 - 145464214
Intron Length:
7725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTGTTGTCCACT
Flanking Amino Acid:
SKPSHYSSPEPEPPSSNKWQ
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
84.3
0.77
0.8
81.3
30
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
44.9
-0.3
2.5
71.18
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016080
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016773
145456235 - 145499079
42845