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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145465268_145467753_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145465268 - 145467753
Intron Length:
2486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTACTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTCTCTTTACT
Flanking Amino Acid:
GLPKSRRKRKCENEEEYRDI
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.9
0.7
0.8
80.6
30.3
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
72.2
0.78
1.6
89.51
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016080
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029429
145461554 - 145499079
37526
ENSAPLT00000016773
145456235 - 145499079
42845