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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145467879_145472100_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145467879 - 145472100
Intron Length:
4222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
ATTACTGTAATT
Flanking Amino Acid:
TANHCNMNENSLAIPINKNE
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
85.8
0.81
0.8
77.5
35.7
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
57.6
0.32
2
78.71
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016080
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029429
145461554 - 145499079
37526
ENSAPLT00000016773
145456235 - 145499079
42845