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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14552112_14552335_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14552112 - 14552335
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTTCTTCATA
Flanking Amino Acid:
PDKLTPLRKQNAGSVLARMV
Intron Amino Acid Position:
838

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.8
86
23.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
77.6
0.62
0.8
73.2
30.7
Minor 5ss
35.6
-1.6
2.8
42.6
38.4
Minor BPS
63.7
0.42
1.7
74.1
38.6

Associated Gene:

Gene:
LRRK2
Ensembl Gene ID:
ENSAPLG00000012447
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042677
14516850 - 14584668
67819
ENSAPLT00000013078
14514400 - 14584668
70269