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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145537530_145539079_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
145537530 - 145539079
Intron Length:
1550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTACA
5'SS Class:
major
3'SS Sequence:
TCTTTCTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATCTAATTGATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
73.7
36.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
84.3
0.77
0.8
80.4
31.6
Minor 5ss
35
-1.7
2.8
44.1
43
Minor BPS
49.3
-0
1.8
61.99
37.4

Associated Gene:

Gene:
REV1
Ensembl Gene ID:
ENSAPLG00000015629
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036030
145537421 - 145580242
42822
ENSAPLT00000029780
145537421 - 145580242
42822
ENSAPLT00000016376
145537421 - 145580242
42822