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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145540653_145541702_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145540653 - 145541702
Intron Length:
1050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGCTT
5'SS Class:
major
3'SS Sequence:
TAAAATTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTGTTTTAAAA
Flanking Amino Acid:
GVAIYVNGFTDPSADELRRL
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
71.9
39.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.9
0.43
1
61.9
43.6
Minor 5ss
30.6
-2.2
3.6
46.7
48.6
Minor BPS
60.1
0.31
1.5
67.32
39.7

Associated Gene:

Gene:
REV1
Ensembl Gene ID:
ENSAPLG00000015629
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036030
145537421 - 145580242
42822
ENSAPLT00000029780
145537421 - 145580242
42822
ENSAPLT00000016376
145537421 - 145580242
42822