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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145541872_145549594_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
145541872 - 145549594
Intron Length:
7723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATATCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACTATATTAAAT
Flanking Amino Acid:
KVVRPEWIMERNHIKKCEME
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77
0.61
1
73.8
40.9
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
52.1
0.14
1.7
69.44
40.9

Associated Gene:

Gene:
REV1
Ensembl Gene ID:
ENSAPLG00000015629
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029780
145537421 - 145580242
42822