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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145550311_145552136_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145550311 - 145552136
Intron Length:
1826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATACT
5'SS Class:
major
3'SS Sequence:
ATCTTCATACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TATATCTTCATA
Flanking Amino Acid:
AGRSALKTDTGNVSVASSAK
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
77.8
36.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
67.3
0.39
0.9
60.7
39.6
Minor 5ss
36.3
-1.5
3.1
51.8
44.8
Minor BPS
56.2
0.19
1.8
68.69
37.9

Associated Gene:

Gene:
REV1
Ensembl Gene ID:
ENSAPLG00000015629
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036030
145537421 - 145580242
42822
ENSAPLT00000029780
145537421 - 145580242
42822
ENSAPLT00000016376
145537421 - 145580242
42822