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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145560110_145562358_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145560110 - 145562358
Intron Length:
2249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATATTTTAACT
Flanking Amino Acid:
QTKCTASVGMGSNILLARMA
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
100
1.24
0.5
100
0
Major PPT
88.3
0.86
0.7
83.3
31.7
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
68.2
0.65
1.3
77.15
39.5

Associated Gene:

Gene:
REV1
Ensembl Gene ID:
ENSAPLG00000015629
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036030
145537421 - 145580242
42822
ENSAPLT00000029780
145537421 - 145580242
42822
ENSAPLT00000016376
145537421 - 145580242
42822