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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145566170_145566340_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145566170 - 145566340
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTCAC
5'SS Class:
major
3'SS Sequence:
TTTTCCTGTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
GTCATCTAAACA
Flanking Amino Acid:
VNKTQIRQLPPKEAEAFLLS
Intron Amino Acid Position:
762

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
61.7
38.8
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
80.7
0.69
0.8
77.5
31.2
Minor 5ss
32
-2.1
3
45.5
42.6
Minor BPS
54.8
0.15
1.7
64.15
42.3

Associated Gene:

Gene:
REV1
Ensembl Gene ID:
ENSAPLG00000015629
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036030
145537421 - 145580242
42822