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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145567681_145569266_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145567681 - 145569266
Intron Length:
1586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGGATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATATATTAATG
Flanking Amino Acid:
MKLNISDMRGVGIQVQQLVP
Intron Amino Acid Position:
829

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.3
30.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
69
0.43
1
66.6
44.3
Minor 5ss
33.6
-1.9
2.8
31.7
42.6
Minor BPS
51.7
-0
1.7
56.82
38.4

Associated Gene:

Gene:
REV1
Ensembl Gene ID:
ENSAPLG00000015629
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036030
145537421 - 145580242
42822
ENSAPLT00000029780
145537421 - 145580242
42822
ENSAPLT00000016376
145537421 - 145580242
42822