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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145576132_145577138_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145576132 - 145577138
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTATCAATCACT
Flanking Amino Acid:
QPEQQPANTFVSKNPCLHPK
Intron Amino Acid Position:
1063

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
86.8
0.83
0.8
84.6
36
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
47.4
-0.1
2.3
72.34
43.6

Associated Gene:

Gene:
REV1
Ensembl Gene ID:
ENSAPLG00000015629
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029780
145537421 - 145580242
42822
ENSAPLT00000016376
145537421 - 145580242
42822
ENSAPLT00000036030
145537421 - 145580242
42822