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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145584098_145584636_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145584098 - 145584636
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
CATTGTGTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ACTTTCTTCATT
Flanking Amino Acid:
GTPMCVPSKNFVEIGIVTSI
Intron Amino Acid Position:
1000

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1.3
77.9
38.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
75.6
0.58
1
68.1
42
Minor 5ss
36.5
-1.5
2.7
41.7
38.2
Minor BPS
62.6
0.48
1.7
77.24
40.1

Associated Gene:

Gene:
EIF5B
Ensembl Gene ID:
ENSAPLG00000015401
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025775
145583405 - 145601786
18382
ENSAPLT00000016092
145583405 - 145601995
18591
ENSAPLT00000028268
145583405 - 145601995
18591