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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145586372_145587109_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145586372 - 145587109
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TTCTTTCTAAAG
Flanking Amino Acid:
HKEDEVPVLKDELIHELKQT
Intron Amino Acid Position:
829

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.5
39.2
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
80.7
0.69
0.9
82.5
26.7
Minor 5ss
31.9
-2.1
3
38.5
46.6
Minor BPS
50.1
-0.1
1.8
60.47
41.7

Associated Gene:

Gene:
EIF5B
Ensembl Gene ID:
ENSAPLG00000015401
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028268
145583405 - 145601995
18591
ENSAPLT00000025775
145583405 - 145601786
18382
ENSAPLT00000016092
145583405 - 145601995
18591