About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145588837_145588994_R


Intron Information:

Intron Rank:
15

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
145588837 - 145588994

Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTAACTTGG

5'SS Class:
strong_major

3'SS Sequence:
CCCTTTCATTCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTTTCAT

U12 Branch Point Sequence:
TCCCCTTTCATT

Flanking Amino Acid:
CQELRAQVMEVKALPGMGTT

Intron Amino Acid Position:
731

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
80.4
0.72
1.1
69.7
43.7

Major BPS
87.6
0.93
0.9
89.3
26

Major PPT
78.5
0.64
0.8
76.7
30.9

Minor 5ss
45.1
-0.5
2.6
58.7
45.8

Minor BPS
53.1
0.18
1.8
68.31
43.6

Associated Gene:

Gene:
EIF5B

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

145583405 - 145601995
18591

145583405 - 145601786
18382

145583405 - 145601995
18591