About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145589178_145589765_R


Intron Information:

Intron Rank:
14

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
145589178 - 145589765

Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAGGTTGG

5'SS Class:
strong_major

3'SS Sequence:
ATCCTGATTCCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TATTAAT

U12 Branch Point Sequence:
TTTTCCCTAAGT

Flanking Amino Acid:
KAIIVEFAKQGLNAALFYEN

Intron Amino Acid Position:
670

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
84.1
0.8
1
69.7
43.7

Major BPS
91.8
1.04
0.7
90.2
19.3

Major PPT
72.4
0.51
1
62.4
42.6

Minor 5ss
38.2
-1.3
3.1
49.2
47.1

Minor BPS
71
0.74
2
92.91
35.6

Associated Gene:

Gene:
EIF5B

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

145583405 - 145601995
18591

145583405 - 145601786
18382

145583405 - 145601995
18591