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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145589898_145591002_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145589898 - 145591002
Intron Length:
1105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATCG
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAG
U12 Branch Point Sequence:
TATTACTGTATT
Flanking Amino Acid:
KCPFIVALNKIDRLYDWKKS
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.8
Major BPS
63.3
0.33
1.6
73.3
39.1
Major PPT
82.4
0.73
0.8
80.6
36.8
Minor 5ss
38.3
-1.3
3
48.3
47.4
Minor BPS
50.7
0.1
2
75.29
41.2

Associated Gene:

Gene:
EIF5B
Ensembl Gene ID:
ENSAPLG00000015401
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028268
145583405 - 145601995
18591
ENSAPLT00000025775
145583405 - 145601786
18382
ENSAPLT00000016092
145583405 - 145601995
18591