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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14559221_14560868_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14559221 - 14560868
Intron Length:
1648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCCATTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TTCTTCTGAAGA
Flanking Amino Acid:
LRVLLHFMMPDTKNDQNGSL
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
78.8
0.65
0.9
76
37.8
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
59.6
0.3
1.8
71.44
41

Associated Gene:

Gene:
LRRK2
Ensembl Gene ID:
ENSAPLG00000012447
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042677
14516850 - 14584668
67819
ENSAPLT00000013078
14514400 - 14584668
70269