About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145592349_145593417_R


Intron Information:

Intron Rank:
11

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
145592349 - 145593417

Intron Length:
1069

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAT|GTAAGTAAT

5'SS Class:
strong_major

3'SS Sequence:
TTTGAAATGTTAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTGAA

U12 Branch Point Sequence:
ATATTTTGAAAT

Flanking Amino Acid:
INEQTKMVKNFDRENIKIPG

Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
86.8
0.87
0.9
89.1
24.2

Major BPS
87.2
0.92
0.8
77.7
37.1

Major PPT
62
0.27
1.1
60.4
44.7

Minor 5ss
39.8
-1.1
2.9
56
41.5

Minor BPS
57.5
0.31
1.5
73.22
37.1

Associated Gene:

Gene:
EIF5B

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

145583405 - 145601995
18591

145583405 - 145601786
18382

145583405 - 145601995
18591