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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145593529_145594437_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
145593529 - 145594437
Intron Length:
909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTAGGA
5'SS Class:
major
3'SS Sequence:
TTTTTGTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
AGCCTCTTAAAT
Flanking Amino Acid:
AYDKAKRRIELRHTHVQDSE
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
60.6
38.2
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
86.4
0.82
0.7
85.6
29.2
Minor 5ss
36
-1.6
3.3
47.9
47.6
Minor BPS
60
0.39
1.4
69.79
40.6

Associated Gene:

Gene:
EIF5B
Ensembl Gene ID:
ENSAPLG00000015401
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025775
145583405 - 145601786
18382