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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145594743_145596086_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145594743 - 145596086
Intron Length:
1344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCATG
5'SS Class:
major
3'SS Sequence:
ATTTTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACTTTATTT
Flanking Amino Acid:
AMVSDEDGEKESKPVHIEVK
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
68.8
43.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83
0.74
0.9
80.4
36.6
Minor 5ss
36.2
-1.6
3.2
47.3
48.3
Minor BPS
67.5
0.63
1.6
84.37
36.8

Associated Gene:

Gene:
EIF5B
Ensembl Gene ID:
ENSAPLG00000015401
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028268
145583405 - 145601995
18591
ENSAPLT00000025775
145583405 - 145601786
18382
ENSAPLT00000016092
145583405 - 145601995
18591