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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145596171_145597535_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145596171 - 145597535
Intron Length:
1365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTAATG
Flanking Amino Acid:
KEETPLPVEPEEKEEEEEAE
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
83
36.1
Major BPS
100
1.24
0.5
100
0
Major PPT
90.3
0.91
0.7
88.7
28.3
Minor 5ss
33.8
-1.8
2.6
43.7
43.3
Minor BPS
64.3
0.31
1.5
69.74
37.7

Associated Gene:

Gene:
EIF5B
Ensembl Gene ID:
ENSAPLG00000015401
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028268
145583405 - 145601995
18591
ENSAPLT00000025775
145583405 - 145601786
18382
ENSAPLT00000016092
145583405 - 145601995
18591