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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145597629_145598671_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
145597629 - 145598671
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGGTTT
5'SS Class:
strong_major
3'SS Sequence:
GATTTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
ACTAGTTTGATT
Flanking Amino Acid:
KKQQQPENKEVSESLEVTTP
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
77.3
33.4
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
82
0.72
0.8
77.5
36.5
Minor 5ss
43.3
-0.7
3.3
63.6
48.1
Minor BPS
48.9
-0
1.8
65.1
40.3

Associated Gene:

Gene:
EIF5B
Ensembl Gene ID:
ENSAPLG00000015401
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028268
145583405 - 145601995
18591
ENSAPLT00000025775
145583405 - 145601786
18382
ENSAPLT00000016092
145583405 - 145601995
18591