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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_145601787_145601869_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
145601787 - 145601869
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGATTT
5'SS Class:
major
3'SS Sequence:
TTTCTTATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTACTTAAGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
75.3
35.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.5
0.82
0.7
86
26.8
Minor 5ss
45.1
-0.5
3.1
62
43.4
Minor BPS
70.3
0.71
1.8
87.6
37.5

Associated Gene:

Gene:
EIF5B
Ensembl Gene ID:
ENSAPLG00000015401
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028268
145583405 - 145601995
18591
ENSAPLT00000016092
145583405 - 145601995
18591
Gene:
Ensembl Gene ID:
ENSAPLG00000029632
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025438
145601597 - 145606594
4998